Use R / Bioconductor for Sequence Analysis (Intermediate Course)

Seattle, USA

2015-04-06 ~ 2015-04-07

Instructors

Description

This INTERMEDIATE course is designed for individuals comfortable using R, and with some familiarity with Bioconductor. It consists of approximately equal parts lecture and practical sessions addressing use of Bioconductor software for analysis and comprehension of high-throughput sequence and related data. Specific topics include use of central Bioconductor classes (e.g., GRanges, SummarizedExperiment), RNASeq gene differential expression, ChIP-seq and methylation work flows, approaches to management and integrative analysis of diverse high-throughput data types, and strategies for working with large data. Participants are required to bring a laptop with wireless internet access and a modern version of the Chrome or Safari web browser.

Materials

Course Package

To launch an Amazon Machine Image (AMI) for this course:

Use R / Bioconductor for Sequence Analysis

Fred Hutchinson Cancer Research Center, Seattle, WA
6-7 April, 2015

Schedule

Day 1 (9:00 - 12:30; 1:30 - 5:00)

Day 2 (9:00 - 12:30; 1:30 - 5:00)

Packages »

Bioconductor's stable, semi-annual release:

Bioconductor is also available via Docker and Amazon Machine Images.

Documentation »

Bioconductor

R / CRAN packages and documentation