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20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2018-03-21T13:20:06-04:00.

Thekkeparambil Chandrabose S, Sriram S, Subramanian S, Cheng S, Ong WK, Rozen S, Kasim NH, Sugii S. Amenable epigenetic traits of dental pulp stem cells underlie high capability of xeno-free episomal reprogramming Stem Cell Res Ther, 9, pp. 68. doi:10.1186/s13287-018-0796-2 (20 March 2018)
Greninger AL, Knudsen GM, Roychoudhury P, Hanson DJ, Sedlak RH, Xie H, Guan J, Nguyen T, Peddu V, Boeckh M, Huang ML, Cook L, Depledge DP, Zerr DM, Koelle DM, Gantt S, Yoshikawa T, Caserta M, Hill JA, Jerome KR. Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6 BMC Genomics, 19, pp. 204. doi:10.1186/s12864-018-4604-2 (20 March 2018)
Saelens W, Cannoodt R, Saeys Y. A comprehensive evaluation of module detection methods for gene expression data Nat Commun, 9, pp. 1090. doi:10.1038/s41467-018-03424-4 (15 March 2018)
Waldron L. Data and Statistical Methods To Analyze the Human Microbiome mSystems, 3(2), pp. e00194-17. doi:10.1128/mSystems.00194-17 (13 March 2018)
Lättekivi F, Kõks S, Keermann M, Reimann E, Prans E, Abram K, Silm H, Kõks G, Kingo K. Transcriptional landscape of human endogenous retroviruses (HERVs) and other repetitive elements in psoriatic skin Sci Rep, 8, pp. 4358. doi:10.1038/s41598-018-22734-7 (12 March 2018)
Peyvandipour A, Saberian N, Shafi A, Donato M, Draghici S. A novel computational approach for drug repurposing using systems biology. Bioinformatics. doi:10.1093/bioinformatics/bty133 (9 March 2018)
Zhang JM, Fan J, Fan HC, Rosenfeld D, Tse DN. An interpretable framework for clustering single-cell RNA-Seq datasets BMC Bioinformatics, 19, pp. 93. doi:10.1186/s12859-018-2092-7 (9 March 2018)
Mastriani E, Zhai R, Zhu S. Microarray-Based MicroRNA Expression Data Analysis with Bioconductor. Methods Mol Biol, 1751, pp. 127-138. doi:10.1007/978-1-4939-7710-9_9 (7 March 2018)
Sun MA, Shao X, Wang Y. Microarray Data Analysis for Transcriptome Profiling. Methods Mol Biol, 1751, pp. 17-33. doi:10.1007/978-1-4939-7710-9_2 (7 March 2018)
Wei Z, Zhang W, Fang H, Li Y, Wang X. esATAC: An Easy-to-use Systematic pipeline for ATAC-seq data analysis. Bioinformatics. doi:10.1093/bioinformatics/bty141 (7 March 2018)
Kapourani CA, Sanguinetti G. BPRMeth: a flexible Bioconductor package for modelling methylation profiles. Bioinformatics. doi:10.1093/bioinformatics/bty129 (7 March 2018)
Fox SA, Currie SS, Dalley AJ, Farah CS. Transcriptome changes induced in vitro by alcohol-containing mouthwashes in normal and dysplastic oral keratinocytes. J Oral Pathol Med. doi:10.1111/jop.12704 (5 March 2018)
Li R, Qu H, Wang S, Wei J, Zhang L, Ma R, Lu J, Zhu J, Zhong WD, Jia Z. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA, and mRNA data in GDC. Bioinformatics. doi:10.1093/bioinformatics/bty124 (2 March 2018)
Lawson JT, Tomazou EM, Bock C, Sheffield NC. MIRA: An R package for DNA methylation-based inference of regulatory activity. Bioinformatics. doi:10.1093/bioinformatics/bty083 (1 March 2018)
Ou J, Liu H, Yu J, Kelliher MA, Castilla LH, Lawson ND, Zhu LJ. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data. BMC Genomics, 19(1), pp. 169. doi:10.1186/s12864-018-4559-3 (1 March 2018)
Bhattacharya S, Dunn P, Thomas CG, Smith B, Schaefer H, Chen J, Hu Z, Zalocusky KA, Shankar RD, Shen-Orr SS, Thomson E, Wiser J, Butte AJ. ImmPort, toward repurposing of open access immunological assay data for translational and clinical research Sci Data, 5, pp. 180015. doi:10.1038/sdata.2018.15 (27 February 2018)
Wagner J, Chelaru F, Kancherla J, Paulson JN, Zhang A, Felix V, Mahurkar A, Elmqvist N, Corrada Bravo H. Metaviz: interactive statistical and visual analysis of metagenomic data. Nucleic Acids Res. doi:10.1093/nar/gky136 (26 February 2018)
Solanki HS, Raja R, Zhavoronkov A, Ozerov IV, Artemov AV, Advani J, Radhakrishnan A, Babu N, Puttamallesh VN, Syed N, Nanjappa V, Subbannayya T, Sahasrabuddhe NA, Patil AH, Prasad TS, Gaykalova D, Chang X, Sathyendran R, Mathur PP, Rangarajan A, Sidransky D, Pandey A, Izumchenko E, Gowda H, Chatterjee A. Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor Oncoscience, 5(1-2), pp. 21-38. doi:10.18632/oncoscience.395 (23 February 2018)
Cremona MA, Pini A, Cumbo F, Makova KD, Chiaromonte F, Vantini S. IWTomics: testing high-resolution sequence-based "Omics" data at multiple locations and scales. Bioinformatics. doi:10.1093/bioinformatics/bty090 (20 February 2018)
Russo PST, Ferreira GR, Cardozo LE, Bürger MC, Arias-Carrasco R, Maruyama SR, Hirata TDC, Lima DS, Passos FM, Fukutani KF, Lever M, Silva JS, Maracaja-Coutinho V, Nakaya HI. CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses. BMC Bioinformatics, 19(1), pp. 56. doi:10.1186/s12859-018-2053-1 (20 February 2018)


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