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BaseSpaceR

This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API


Bioconductor version: Development (3.19)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")
BaseSpaceR PDF R Script
Reference Manual PDF

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.47.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
System Requirements
URL
See More
Suggests RUnit, IRanges, Rsamtools
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.47.0.tar.gz
Windows Binary
macOS Binary (x86_64) BaseSpaceR_1.47.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BaseSpaceR
Bioc Package Browser https://code.bioconductor.org/browse/BaseSpaceR/
Package Short Url https://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report Download Stats