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This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: Development (3.19)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at>

Citation (from within R, enter citation("BaseSpaceR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

BaseSpaceR PDF R Script
Reference Manual PDF


biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.47.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
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Suggests RUnit, IRanges, Rsamtools
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Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.47.0.tar.gz
Windows Binary
macOS Binary (x86_64) BaseSpaceR_1.47.0.tgz
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
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