BioNetStat

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of BioNetStat; for the stable release version, see BioNetStat.

Biological Network Analysis

Bioconductor version: Development (3.19)

A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.

Author: Vinícius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge

Maintainer: Vinicius Jardim <viniciusjc at gmail.com>

Citation (from within R, enter citation("BioNetStat")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioNetStat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology
Version	1.23.1
In Bioconductor since	BioC 3.7 (R-3.5) (6 years)
License	GPL (>= 3)
Depends	R (>= 4.0), shiny, igraph, shinyBS, pathview, DT
Imports	BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr, rmarkdown, markdown
System Requirements
URL	http://github.com/jardimViniciusC/BioNetStat
Bug Reports	http://github.com/jardimViniciusC/BioNetStat/issues

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BioNetStat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioNetStat
Package Short Url	https://bioconductor.org/packages/BioNetStat/
Package Downloads Report	Download Stats