CNPBayes

DOI: 10.18129/B9.bioc.CNPBayes    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of CNPBayes; to use it, please install the devel version of Bioconductor.

Bayesian mixture models for copy number polymorphisms

Bioconductor version: Development (3.10)

Bayesian hierarchical mixture models for batch effects and copy number.

Author: Stephen Cristiano, Jacob Carey, and Rob Scharpf

Maintainer: Jacob Carey <jcarey15 at jhu.edu>

Citation (from within R, enter citation("CNPBayes")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNPBayes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Bayesian, CopyNumberVariation, Software
Version 1.15.1
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License Artistic-2.0
Depends R (>= 3.4.0), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer, gtools, combinat, GenomeInfoDb(>= 1.11.6), methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment, mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr, tibble, scales, data.table, RcppArmadillo
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS, VanillaICE, tidyverse
SystemRequirements
Enhances
URL https://github.com/scristia/CNPBayes
BugReports https://github.com/scristia/CNPBayes/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/CNPBayes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNPBayes
Package Short Url http://bioconductor.org/packages/CNPBayes/
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