CNVtools

DOI: 10.18129/B9.bioc.CNVtools    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of CNVtools; for the stable release version, see CNVtools.

A package to test genetic association with CNV data

Bioconductor version: Development (3.12)

This package is meant to facilitate the testing of Copy Number Variant data for genetic association, typically in case-control studies.

Author: Chris Barnes <christopher.barnes at imperial.ac.uk> and Vincent Plagnol <vincent.plagnol at cimr.cam.ac.uk>

Maintainer: Chris Barnes <christopher.barnes at imperial.ac.uk>

Citation (from within R, enter citation("CNVtools")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNVtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GeneticVariability, Software
Version 1.83.1
In Bioconductor since BioC 2.5 (R-2.10) (11 years)
License GPL-3
Depends R (>= 2.10), survival
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/CNVtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNVtools
Package Short Url https://bioconductor.org/packages/CNVtools/
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