Registration and Call for Abstracts Open for Bioc2024

ChIPComp

This is the development version of ChIPComp; for the stable release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets


Bioconductor version: Development (3.19)

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at emory.edu>

Citation (from within R, enter citation("ChIPComp")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChIPComp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPComp")
ChIPComp PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version 1.33.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
System Requirements
URL
See More
Suggests BiocStyle, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPComp_1.33.0.tar.gz
Windows Binary ChIPComp_1.33.0.zip
macOS Binary (x86_64) ChIPComp_1.33.0.tgz
macOS Binary (arm64) ChIPComp_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPComp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPComp
Bioc Package Browser https://code.bioconductor.org/browse/ChIPComp/
Package Short Url https://bioconductor.org/packages/ChIPComp/
Package Downloads Report Download Stats