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This is the development version of ChIPexoQual; for the stable release version, see ChIPexoQual.


Bioconductor version: Development (3.19)

Package with a quality control pipeline for ChIP-exo/nexus data.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Citation (from within R, enter citation("ChIPexoQual")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Vignette Title HTML R Script
Reference Manual PDF


biocViews Alignment, ChIPSeq, Coverage, QualityControl, Sequencing, Software, Transcription, Visualization
Version 1.27.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL (>=2)
Depends R (>= 3.5.0), GenomicAlignments(>= 1.0.1)
Imports methods, utils, GenomeInfoDb, stats, BiocParallel, GenomicRanges(>= 1.14.4), ggplot2 (>= 1.0), data.table (>= 1.9.6), Rsamtools(>= 1.16.1), IRanges(>= 1.6), S4Vectors(>= 0.8), biovizBase(>= 1.18), broom (>= 0.4), RColorBrewer (>= 1.1), dplyr (>= 0.5), scales (>= 0.4.0), viridis (>= 0.3), hexbin (>= 1.27), rmarkdown
System Requirements
URL https:github.com/keleslab/ChIPexoQual
Bug Reports https://github.com/welch16/ChIPexoQual/issues
See More
Suggests ChIPexoQualExample(>= 0.99.1), knitr (>= 1.10), BiocStyle, gridExtra (>= 2.2), testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPexoQual_1.27.0.tar.gz
Windows Binary ChIPexoQual_1.27.0.zip (64-bit only)
macOS Binary (x86_64) ChIPexoQual_1.27.0.tgz
macOS Binary (arm64) ChIPexoQual_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPexoQual
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPexoQual
Bioc Package Browser https://code.bioconductor.org/browse/ChIPexoQual/
Package Short Url https://bioconductor.org/packages/ChIPexoQual/
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