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ChemmineOB

This is the development version of ChemmineOB; for the stable release version, see ChemmineOB.

R interface to a subset of OpenBabel functionalities


Bioconductor version: Development (3.22)

ChemmineOB provides an R interface to a subset of cheminformatics functionalities implemented by the OpelBabel C++ project. OpenBabel is an open source cheminformatics toolbox that includes utilities for structure format interconversions, descriptor calculations, compound similarity searching and more. ChemineOB aims to make a subset of these utilities available from within R. For non-developers, ChemineOB is primarily intended to be used from ChemmineR as an add-on package rather than used directly.

Author: Kevin Horan, Thomas Girke

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("ChemmineOB")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChemmineOB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChemmineOB")
ChemmineOB HTML R Script
Reference Manual PDF

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.47.1
In Bioconductor since BioC 2.13 (R-3.0) (11.5 years)
License Artistic-2.0
Depends R (>= 2.15.1), methods
Imports BiocGenerics, Rcpp (>= 0.11.0)
System Requirements OpenBabel (>= 3.0.0) with headers (http://openbabel.org). Eigen3 with headers.
URL https://github.com/girke-lab/ChemmineOB
See More
Suggests ChemmineR, BiocStyle, knitr, knitrBootstrap, BiocManager, rmarkdown, RUnit, codetools
Linking To BH, Rcpp
Enhances ChemmineR(>= 2.13.0)
Depends On Me
Imports Me
Suggests Me MetMashR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChemmineOB_1.47.1.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64) ChemmineOB_1.47.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ChemmineOB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChemmineOB
Bioc Package Browser https://code.bioconductor.org/browse/ChemmineOB/
Package Short Url https://bioconductor.org/packages/ChemmineOB/
Package Downloads Report Download Stats