HPAanalyze

DOI: 10.18129/B9.bioc.HPAanalyze  

This is the development version of HPAanalyze; for the stable release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: Development (3.19)

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")

 

HTML	R Script	1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze
HTML	R Script	2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze
HTML	R Script	3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries
HTML	R Script	4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline
HTML	R Script	5. Tutorial: Export Human Protein Atlas (HPA) data as JSON
HTML	R Script	6. Tutorial: Download histology images from the Human Protein Atlas
HTML	R Script	99. Code for figures from HPAanalyze paper
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CellBiology, Proteomics, Software, Visualization
Version	1.21.0
In Bioconductor since	BioC 3.8 (R-3.5) (5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5.0)
Imports	dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
LinkingTo
Suggests	knitr, rmarkdown, markdown, devtools, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/anhtr/HPAanalyze
BugReports	https://github.com/anhtr/HPAanalyze/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HPAanalyze_1.21.0.tar.gz
Windows Binary	HPAanalyze_1.21.0.zip
macOS Binary (x86_64)	HPAanalyze_1.21.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser	https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url	https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report	Download Stats