Imetagene

DOI: 10.18129/B9.bioc.Imetagene    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of Imetagene; for the stable release version, see Imetagene.

A graphical interface for the metagene package

Bioconductor version: Development (3.13)

This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.

Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>

Citation (from within R, enter citation("Imetagene")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Imetagene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software
Version 1.21.1
In Bioconductor since BioC 3.2 (R-3.2) (5.5 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 3.2.0), metagene, shiny
Imports d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2
LinkingTo
Suggests knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/andronekomimi/Imetagene/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/Imetagene
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Imetagene
Package Short Url https://bioconductor.org/packages/Imetagene/
Package Downloads Report Download Stats

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