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Detection of de novo deletion in targeted sequencing trios

Bioconductor version: Development (3.19)

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at>

Citation (from within R, enter citation("MDTS")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
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