MassSpecWavelet

DOI: 10.18129/B9.bioc.MassSpecWavelet    

This is the development version of MassSpecWavelet; for the stable release version, see MassSpecWavelet.

Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Bioconductor version: Development (3.17)

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See

Author: Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

Maintainer: Sergio Oller Moreno <sergioller at gmail.com>

Citation (from within R, enter citation("MassSpecWavelet")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MassSpecWavelet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MassSpecWavelet")

 

HTML R Script Finding local maxima
HTML R Script Using the MassSpecWavelet package
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, PeakDetection, Proteomics, Software
Version 1.65.0
In Bioconductor since BioC 2.0 (R-2.5) (15.5 years)
License LGPL (>= 2)
Depends
Imports
LinkingTo
Suggests signal, waveslim, BiocStyle, knitr, rmarkdown, RUnit, bench
SystemRequirements
Enhances
URL https://github.com/zeehio/MassSpecWavelet
BugReports http://github.com/zeehio/MassSpecWavelet/issues
Depends On Me
Imports Me cosmiq, xcms
Suggests Me downlit
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MassSpecWavelet_1.65.0.tar.gz
Windows Binary MassSpecWavelet_1.65.0.zip
macOS Binary (x86_64) MassSpecWavelet_1.65.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MassSpecWavelet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MassSpecWavelet
Package Short Url https://bioconductor.org/packages/MassSpecWavelet/
Package Downloads Report Download Stats

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