MetaCyto
This is the development version of MetaCyto; for the stable release version, see MetaCyto.
MetaCyto: A package for meta-analysis of cytometry data
Bioconductor version: Development (3.20)
This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.
Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte
Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>
citation("MetaCyto")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MetaCyto")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaCyto")
Vignette Title | HTML | R Script |
Reference Manual |
Details
biocViews | CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Preprocessing, Software, StatisticalMethod |
Version | 1.27.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | GPL (>= 2) |
Depends | R (>= 3.4) |
Imports | flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils |
System Requirements | |
URL |
See More
Suggests | knitr, dplyr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MetaCyto_1.27.0.tar.gz |
Windows Binary | MetaCyto_1.27.0.zip |
macOS Binary (x86_64) | MetaCyto_1.27.0.tgz |
macOS Binary (arm64) | MetaCyto_1.27.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetaCyto |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaCyto |
Bioc Package Browser | https://code.bioconductor.org/browse/MetaCyto/ |
Package Short Url | https://bioconductor.org/packages/MetaCyto/ |
Package Downloads Report | Download Stats |