MetaNeighbor

DOI: 10.18129/B9.bioc.MetaNeighbor    

This is the development version of MetaNeighbor; to use it, please install the devel version of Bioconductor.

Single cell replicability analysis

Bioconductor version: Development (3.10)

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Manthan Shah <shah at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")

 

PDF R Script MetaNeighbor user guide
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics
Version 1.5.0
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License MIT + file LICENSE
Depends R (>= 3.5)
Imports beanplot (>= 1.2), GenomicRanges(>= 1.34.0), gplots (>= 3.0.1), Matrix (>= 1.2), matrixStats (>= 0.54), Rcpp, RColorBrewer (>= 1.1), stats (>= 3.4), SummarizedExperiment(>= 1.12), utils (>= 3.4)
LinkingTo Rcpp
Suggests knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaNeighbor_1.5.0.tar.gz
Windows Binary MetaNeighbor_1.5.0.zip
Mac OS X 10.11 (El Capitan) MetaNeighbor_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaNeighbor
Package Short Url http://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report Download Stats

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