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MultimodalExperiment

This is the development version of MultimodalExperiment; for the stable release version, see MultimodalExperiment.

Integrative Bulk and Single-Cell Experiment Container


Bioconductor version: Development (3.19)

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

Author: Lucas Schiffer [aut, cre]

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("MultimodalExperiment")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MultimodalExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultimodalExperiment")
MultimodalExperiment HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, SingleCell, Software
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.3.0), IRanges, S4Vectors
Imports BiocGenerics, MultiAssayExperiment, methods, utils
System Requirements
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Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultimodalExperiment_1.3.0.tar.gz
Windows Binary MultimodalExperiment_1.3.0.zip
macOS Binary (x86_64) MultimodalExperiment_1.3.0.tgz
macOS Binary (arm64) MultimodalExperiment_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultimodalExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultimodalExperiment
Bioc Package Browser https://code.bioconductor.org/browse/MultimodalExperiment/
Package Short Url https://bioconductor.org/packages/MultimodalExperiment/
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