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PAIRADISE

This is the development version of PAIRADISE; for the stable release version, see PAIRADISE.

PAIRADISE: Paired analysis of differential isoform expression


Bioconductor version: Development (3.19)

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")
PAIRADISE HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6), nloptr
Imports SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel
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Suggests testthat, knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PAIRADISE_1.19.0.tar.gz
Windows Binary PAIRADISE_1.19.0.zip (64-bit only)
macOS Binary (x86_64) PAIRADISE_1.19.0.tgz
macOS Binary (arm64) PAIRADISE_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PAIRADISE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PAIRADISE
Bioc Package Browser https://code.bioconductor.org/browse/PAIRADISE/
Package Short Url https://bioconductor.org/packages/PAIRADISE/
Package Downloads Report Download Stats