PepsNMR

DOI: 10.18129/B9.bioc.PepsNMR    

This is the development version of PepsNMR; for the stable release version, see PepsNMR.

Pre-process 1H-NMR FID signals

Bioconductor version: Development (3.11)

This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.

Author: Manon Martin [aut, cre], Bernadette Govaerts [aut, ths], BenoƮt Legat [aut], Pascal de Tullio [dtc], Bruno Boulanger [ctb], Paul H.C. Eilers [ctb], Julien Vanwinsberghe [ctb]

Maintainer: Manon Martin <manon.martin at uclouvain.be>

Citation (from within R, enter citation("PepsNMR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PepsNMR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PepsNMR")

 

HTML R Script Application of PepsNMR on the Human Serum dataset
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Metabolomics, Preprocessing, Software, Visualization
Version 1.5.0
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL-2 | file LICENSE
Depends R (>= 3.5)
Imports Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2, methods, graphics, stats
LinkingTo
Suggests knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
SystemRequirements
Enhances
URL https://github.com/ManonMartin/PepsNMR
BugReports https://github.com/ManonMartin/PepsNMR/issues
Depends On Me
Imports Me ASICS
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PepsNMR_1.5.0.tar.gz
Windows Binary PepsNMR_1.5.0.zip
Mac OS X 10.11 (El Capitan) PepsNMR_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PepsNMR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PepsNMR
Package Short Url https://bioconductor.org/packages/PepsNMR/
Package Downloads Report Download Stats

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