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RNAmodR.AlkAnilineSeq

This is the development version of RNAmodR.AlkAnilineSeq; for the stable release version, see RNAmodR.AlkAnilineSeq.

Detection of m7G, m3C and D modification by AlkAnilineSeq


Bioconductor version: Development (3.19)

RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.AlkAnilineSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAmodR.AlkAnilineSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.AlkAnilineSeq")
RNAmodR.AlkAnilineSeq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Sequencing, Software, Visualization, WorkflowStep
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 4.0), RNAmodR(>= 1.5.3)
Imports methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz
System Requirements
URL https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq
Bug Reports https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, RNAmodR.Data
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me RNAmodR.ML
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.AlkAnilineSeq_1.17.0.tar.gz
Windows Binary RNAmodR.AlkAnilineSeq_1.17.0.zip
macOS Binary (x86_64) RNAmodR.AlkAnilineSeq_1.17.0.tgz
macOS Binary (arm64) RNAmodR.AlkAnilineSeq_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.AlkAnilineSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.AlkAnilineSeq
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.AlkAnilineSeq/
Package Short Url https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq/
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