Rbwa

DOI: 10.18129/B9.bioc.Rbwa    

This is the development version of Rbwa; for the stable release version, see Rbwa.

R wrapper for BWA-backtrack and BWA-MEM aligners

Bioconductor version: Development (3.17)

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("Rbwa")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rbwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbwa")

 

HTML R Script An introduction to Rbwa
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Alignment, Sequencing, Software
Version 1.3.0
In Bioconductor since BioC 3.15 (R-4.2) (0.5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements GNU make
Enhances
URL https://github.com/Jfortin1/Rbwa
BugReports https://github.com/Jfortin1/Rbwa/issues
Depends On Me
Imports Me crisprBwa
Suggests Me crisprDesign
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbwa_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64) Rbwa_1.3.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Rbwa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rbwa
Package Short Url https://bioconductor.org/packages/Rbwa/
Package Downloads Report Download Stats

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