SCnorm

DOI: 10.18129/B9.bioc.SCnorm    

This is the development version of SCnorm; to use it, please install the devel version of Bioconductor.

Normalization of single cell RNA-seq data

Bioconductor version: Development (3.10)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")

 

PDF R Script SCnorm Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, Normalization, RNASeq, SingleCell, Software
Version 1.7.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License GPL (>= 2)
Depends R (>= 3.4.0)
Imports stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, SingleCellExperiment, SummarizedExperiment, S4Vectors, ggplot2, forcats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL https://github.com/rhondabacher/SCnorm
BugReports https://github.com/rhondabacher/SCnorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCnorm_1.7.0.tar.gz
Windows Binary SCnorm_1.7.0.zip
Mac OS X 10.11 (El Capitan) SCnorm_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCnorm
Package Short Url http://bioconductor.org/packages/SCnorm/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: