SigFuge

DOI: 10.18129/B9.bioc.SigFuge    

This is the development version of SigFuge; to use it, please install the devel version of Bioconductor.

SigFuge

Bioconductor version: Development (3.10)

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Citation (from within R, enter citation("SigFuge")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SigFuge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

 

PDF R Script SigFuge Tutorial
PDF   Reference Manual

Details

biocViews Clustering, ImmunoOncology, RNASeq, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 2.13 (R-3.0) (6 years)
License GPL-3
Depends R (>= 3.1.1), GenomicRanges
Imports ggplot2, matlab, reshape, sigclust
LinkingTo
Suggests org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SigFuge_1.23.0.tar.gz
Windows Binary SigFuge_1.23.0.zip
Mac OS X 10.11 (El Capitan) SigFuge_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SigFuge
Package Short Url http://bioconductor.org/packages/SigFuge/
Package Downloads Report Download Stats

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