StarBioTrek
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of StarBioTrek; for the stable release version, see StarBioTrek.
StarBioTrek
Bioconductor version: Development (3.19)
This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.
Author: Claudia Cava, Isabella Castiglioni
Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>
citation("StarBioTrek")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("StarBioTrek")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneRegulation, KEGG, Network, Pathways, Software |
| Version | 1.29.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.3) |
| Imports | SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2 |
| System Requirements | |
| URL | https://github.com/claudiacava/StarBioTrek |
| Bug Reports | https://github.com/claudiacava/StarBioTrek/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/StarBioTrek |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/StarBioTrek |
| Package Short Url | https://bioconductor.org/packages/StarBioTrek/ |
| Package Downloads Report | Download Stats |