StarBioTrek

DOI: 10.18129/B9.bioc.StarBioTrek    

This is the development version of StarBioTrek; to use it, please install the devel version of Bioconductor.

StarBioTrek

Bioconductor version: Development (3.10)

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("StarBioTrek")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, KEGG, Network, Pathways, Software
Version 1.11.0
In Bioconductor since BioC 3.4 (R-3.3) (3 years)
License GPL (>= 3)
Depends R (>= 3.3)
Imports SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
SystemRequirements
Enhances
URL https://github.com/claudiacava/StarBioTrek
BugReports https://github.com/claudiacava/StarBioTrek/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package StarBioTrek_1.11.0.tar.gz
Windows Binary StarBioTrek_1.11.0.zip
Mac OS X 10.11 (El Capitan) StarBioTrek_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/StarBioTrek
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/StarBioTrek
Package Short Url http://bioconductor.org/packages/StarBioTrek/
Package Downloads Report Download Stats

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