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Streamer

This is the development version of Streamer; for the stable release version, see Streamer.

Enabling stream processing of large files


Bioconductor version: Development (3.19)

Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is 'streamed' from disk into R via a `producer' and through a series of `consumers' that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.

Author: Martin Morgan, Nishant Gopalakrishnan

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("Streamer")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Streamer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Streamer")
Streamer: A simple example PDF R Script
Reference Manual PDF

Details

biocViews DataImport, Infrastructure, Software
Version 1.49.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License Artistic-2.0
Depends
Imports methods, graph, RBGL, parallel, BiocGenerics
System Requirements
URL
See More
Suggests RUnit, Rsamtools(>= 1.5.53), GenomicAlignments, Rgraphviz
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Streamer_1.49.0.tar.gz
Windows Binary Streamer_1.49.0.zip
macOS Binary (x86_64) Streamer_1.49.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Streamer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Streamer
Bioc Package Browser https://code.bioconductor.org/browse/Streamer/
Package Short Url https://bioconductor.org/packages/Streamer/
Package Downloads Report Download Stats