TPP
This is the development version of TPP; for the stable release version, see TPP.
Analyze thermal proteome profiling (TPP) experiments
Bioconductor version: Development (3.20)
Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).
Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber
Maintainer: Dorothee Childs <d.childs at posteo.de>
citation("TPP")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TPP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TPP")
TPP_introduction_1D | R Script | |
TPP_introduction_2D | R Script | |
TPP_introduction_NPARC | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
Version | 3.33.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4), Biobase, dplyr, magrittr, tidyr |
Imports | biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, splines, stats, stringr, tibble, utils, VennDiagram, VGAM |
System Requirements | |
URL |
See More
Suggests | BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | Rtpca |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TPP_3.33.0.tar.gz |
Windows Binary | TPP_3.33.0.zip |
macOS Binary (x86_64) | TPP_3.33.0.tgz |
macOS Binary (arm64) | TPP_3.33.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TPP |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TPP |
Bioc Package Browser | https://code.bioconductor.org/browse/TPP/ |
Package Short Url | https://bioconductor.org/packages/TPP/ |
Package Downloads Report | Download Stats |