XDE

This is the development version of XDE; for the stable release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: Development (3.19)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

XDE Vignette	PDF	R Script
XdeParameterClass Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, Microarray, Software
Version	2.49.0
In Bioconductor since	BioC 2.2 (R-2.7) (16 years)
License	LGPL-2
Depends	R (>= 2.10.0), Biobase(>= 2.5.5)
Imports	BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
System Requirements
URL

Suggests	MASS, RUnit
Linking To
Enhances	coda
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XDE_2.49.0.tar.gz
Windows Binary	XDE_2.49.0.zip
macOS Binary (x86_64)	XDE_2.49.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser	https://code.bioconductor.org/browse/XDE/
Package Short Url	https://bioconductor.org/packages/XDE/
Package Downloads Report	Download Stats