cghMCR
This is the development version of cghMCR; for the stable release version, see cghMCR.
Find chromosome regions showing common gains/losses
Bioconductor version: Development (3.19)
This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.
Author: J. Zhang and B. Feng
Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>
Citation (from within R, enter
citation("cghMCR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cghMCR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | CopyNumberVariation, Microarray, Software |
Version | 1.61.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
License | LGPL |
Depends | methods, DNAcopy, CNTools, limma |
Imports | BiocGenerics(>= 0.1.6), stats4 |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | cghMCR_1.61.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/cghMCR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cghMCR |
Bioc Package Browser | https://code.bioconductor.org/browse/cghMCR/ |
Package Short Url | https://bioconductor.org/packages/cghMCR/ |
Package Downloads Report | Download Stats |