chromDraw

DOI: 10.18129/B9.bioc.chromDraw    

This is the development version of chromDraw; to use it, please install the devel version of Bioconductor.

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Bioconductor version: Development (3.10)

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Citation (from within R, enter citation("chromDraw")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chromDraw")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")

 

PDF R Script chromDraw
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 2.15.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License GPL-3
Depends R (>= 3.0.0)
Imports Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46)
LinkingTo Rcpp
Suggests
SystemRequirements Rtools (>= 3.1)
Enhances
URL www.plantcytogenomics.org/chromDraw
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromDraw_2.15.0.tar.gz
Windows Binary chromDraw_2.15.0.zip
Mac OS X 10.11 (El Capitan) chromDraw_2.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chromDraw
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chromDraw
Package Short Url https://bioconductor.org/packages/chromDraw/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: