condcomp

DOI: 10.18129/B9.bioc.condcomp    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of condcomp; to use it, please install the devel version of Bioconductor.

Condition Comparison in scRNA-seq Data

Bioconductor version: Development (3.10)

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Maintainer: <>

Citation (from within R, enter citation("condcomp")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("condcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Clustering, ImmunoOncology, SingleCell, Software, Visualization
Version 1.3.1
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL (>=2) | file LICENSE
Depends R (>= 3.5.0)
Imports cluster, ggplot2, ggrepel, outliers
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/condcomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/condcomp
Package Short Url http://bioconductor.org/packages/condcomp/
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