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This is the development version of demuxmix; for the stable release version, see demuxmix.

Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

Bioconductor version: Development (3.20)

A package for demultiplexing single-cell sequencing experiments of pooled cells labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.

Author: Hans-Ulrich Klein [aut, cre]

Maintainer: Hans-Ulrich Klein <hansulrich.klein at>

Citation (from within R, enter citation("demuxmix")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Demultiplexing cells with demuxmix HTML R Script
Reference Manual PDF


biocViews Classification, Preprocessing, Regression, Sequencing, SingleCell, Software
Version 1.7.0
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License Artistic-2.0
Depends R (>= 4.0.0)
Imports stats, MASS, Matrix, ggplot2, gridExtra, methods
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Suggests BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown, testthat (>= 3.0.0)
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Imports Me demuxSNP
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Source Package demuxmix_1.7.0.tar.gz
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macOS Binary (x86_64) demuxmix_1.7.0.tgz
macOS Binary (arm64) demuxmix_1.7.0.tgz
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