DOI: 10.18129/B9.bioc.diffloop    

This is the development version of diffloop; for the stable release version, see diffloop.

Identifying differential DNA loops from chromatin topology data

Bioconductor version: Development (3.15)

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

Author: Caleb Lareau [aut, cre], Martin Aryee [aut]

Maintainer: Caleb Lareau <caleblareau at g.harvard.edu>

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biocViews DataImport, DataRepresentation, GO, Preprocessing, QualityControl, Software, Visualization
Version 1.23.1
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0)
Imports methods, GenomicRanges, foreach, plyr, dplyr, reshape2, ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt, GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats, utils, Biobase, readr, data.table, rtracklayer, pbapply, limma
Suggests DESeq2, diffloopdata, ggrepel, knitr, rmarkdown, testthat
URL https://github.com/aryeelab/diffloop
BugReports https://github.com/aryeelab/diffloop/issues
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