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epivizrChart

This is the development version of epivizrChart; for the stable release version, see epivizrChart.

R interface to epiviz web components


Bioconductor version: Development (3.19)

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Author: Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrChart")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epivizrChart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrChart")
Introduction to epivizrChart HTML R Script
Visualizing `RangeSummarizedExperiment` objects Shiny Apps using epivizrChart HTML R Script
Visualizing Files with epivizrChart HTML R Script
Visualizing genomic data in Shiny Apps using epivizrChart HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, Software, Visualization
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports epivizrData(>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics
System Requirements
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Suggests testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrChart_1.25.0.tar.gz
Windows Binary epivizrChart_1.25.0.zip
macOS Binary (x86_64) epivizrChart_1.25.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/epivizrChart
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrChart
Bioc Package Browser https://code.bioconductor.org/browse/epivizrChart/
Package Short Url https://bioconductor.org/packages/epivizrChart/
Package Downloads Report Download Stats