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fastLiquidAssociation

This is the development version of fastLiquidAssociation; for the stable release version, see fastLiquidAssociation.

functions for genome-wide application of Liquid Association


Bioconductor version: Development (3.19)

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author: Tina Gunderson

Maintainer: Tina Gunderson <gunderson.tina at gmail.com>

Citation (from within R, enter citation("fastLiquidAssociation")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fastLiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fastLiquidAssociation")
fastLiquidAssociation Vignette PDF R Script
Reference Manual PDF

Details

biocViews CellBiology, GeneExpression, Genetics, Pathways, Software
Version 1.39.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils
Imports WGCNA, impute, preprocessCore
System Requirements
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Suggests GOstats, yeastCC, org.Sc.sgd.db
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fastLiquidAssociation_1.39.0.tar.gz
Windows Binary fastLiquidAssociation_1.39.0.zip
macOS Binary (x86_64) fastLiquidAssociation_1.39.0.tgz
macOS Binary (arm64) fastLiquidAssociation_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fastLiquidAssociation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fastLiquidAssociation
Bioc Package Browser https://code.bioconductor.org/browse/fastLiquidAssociation/
Package Short Url https://bioconductor.org/packages/fastLiquidAssociation/
Package Downloads Report Download Stats