mBPCR

DOI: 10.18129/B9.bioc.mBPCR    

This is the development version of mBPCR; for the stable release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: Development (3.11)

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.41.0
In Bioconductor since BioC 2.5 (R-2.10) (10 years)
License GPL (>= 2)
Depends oligoClasses, SNPchip
Imports Biobase
LinkingTo
Suggests xtable
SystemRequirements
Enhances
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR
Package Short Url https://bioconductor.org/packages/mBPCR/
Package Downloads Report Download Stats

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