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miRBaseConverter

This is the development version of miRBaseConverter; for the stable release version, see miRBaseConverter.

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions


Bioconductor version: Development (3.19)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("miRBaseConverter")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")
miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, miRNA
Version 1.27.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports stats
System Requirements
URL https://github.com/taoshengxu/miRBaseConverter
Bug Reports https://github.com/taoshengxu/miRBaseConverter/issues
See More
Suggests BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me SPONGE
Suggests Me EpiMix
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRBaseConverter_1.27.0.tar.gz
Windows Binary miRBaseConverter_1.27.0.zip
macOS Binary (x86_64) miRBaseConverter_1.27.0.tgz
macOS Binary (arm64) miRBaseConverter_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRBaseConverter
Bioc Package Browser https://code.bioconductor.org/browse/miRBaseConverter/
Package Short Url https://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report Download Stats