Registration and Call for Abstracts Open for Bioc2024


This is the development version of mosaics; for the stable release version, see mosaics.

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Development (3.19)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at>

Citation (from within R, enter citation("mosaics")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version 2.41.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL (>= 2)
Depends R (>= 3.0.0), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
System Requirements Perl
See More
Suggests mosaicsExample
Linking To Rcpp
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats