msgbsR
This is the development version of msgbsR; for the stable release version, see msgbsR.
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
Bioconductor version: Development (3.20)
Pipeline for the anaysis of a MS-GBS experiment.
Author: Benjamin Mayne
Maintainer: Benjamin Mayne <benjamin.mayne at adelaide.edu.au>
Citation (from within R, enter
citation("msgbsR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("msgbsR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Software |
Version | 1.29.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
License | GPL-2 |
Depends | R (>= 3.4), GenomicRanges, methods |
Imports | BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, GenomeInfoDb, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils |
System Requirements | |
URL |
See More
Suggests | roxygen2, BSgenome.Rnorvegicus.UCSC.rn6 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/msgbsR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msgbsR |
Package Short Url | https://bioconductor.org/packages/msgbsR/ |
Package Downloads Report | Download Stats |