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multiOmicsViz

This is the development version of multiOmicsViz; for the stable release version, see multiOmicsViz.

Plot the effect of one omics data on other omics data along the chromosome


Bioconductor version: Development (3.19)

Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Citation (from within R, enter citation("multiOmicsViz")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("multiOmicsViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiOmicsViz")
multiOmicsViz PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, SystemsBiology, Visualization
Version 1.27.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License LGPL
Depends R (>= 3.3.2)
Imports methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiOmicsViz_1.27.0.tar.gz
Windows Binary multiOmicsViz_1.27.0.zip
macOS Binary (x86_64) multiOmicsViz_1.27.0.tgz
macOS Binary (arm64) multiOmicsViz_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiOmicsViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiOmicsViz
Bioc Package Browser https://code.bioconductor.org/browse/multiOmicsViz/
Package Short Url https://bioconductor.org/packages/multiOmicsViz/
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