ncGTW

DOI: 10.18129/B9.bioc.ncGTW    

This is the development version of ncGTW; to use it, please install the devel version of Bioconductor.

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection

Bioconductor version: Development (3.10)

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Author: Chiung-Ting Wu <ctwu at vt.edu>

Maintainer: Chiung-Ting Wu <ctwu at vt.edu>

Citation (from within R, enter citation("ncGTW")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ncGTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncGTW")

 

HTML R Script ncGTW User Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, MassSpectrometry, Metabolomics, Software
Version 0.99.7
In Bioconductor since BioC 3.10 (R-3.6)
License GPL-2
Depends methods, BiocParallel, xcms
Imports Rcpp, grDevices, graphics, stats
LinkingTo Rcpp
Suggests BiocStyle, knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/ChiungTingWu/ncGTW/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncGTW_0.99.7.tar.gz
Windows Binary ncGTW_0.99.7.zip
Mac OS X 10.11 (El Capitan) ncGTW_0.99.7.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncGTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncGTW
Package Short Url http://bioconductor.org/packages/ncGTW/
Package Downloads Report Download Stats

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