optimalFlow

DOI: 10.18129/B9.bioc.optimalFlow    

This is the development version of optimalFlow; for the stable release version, see optimalFlow.

optimalFlow

Bioconductor version: Development (3.17)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews FlowCytometry, Software, Technology
Version 1.11.0
In Bioconductor since BioC 3.11 (R-4.0) (2.5 years)
License Artistic-2.0
Depends dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, magick
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64) optimalFlow_1.11.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/optimalFlow
Package Short Url https://bioconductor.org/packages/optimalFlow/
Package Downloads Report Download Stats

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