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pRolocGUI

This is the development version of pRolocGUI; for the stable release version, see pRolocGUI.

Interactive visualisation of spatial proteomics data


Bioconductor version: Development (3.19)

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa Breckels [aut, cre] , Thomas Naake [aut], Laurent Gatto [aut]

Maintainer: Lisa Breckels <lms79 at cam.ac.uk>

Citation (from within R, enter citation("pRolocGUI")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRolocGUI")
pRolocGUI - Interactive visualisation of spatial proteomics data HTML R Script
Reference Manual PDF
pRoloc, pRolocdata and pRolocGUI Video

Details

biocViews GUI, Proteomics, Software, Visualization
Version 2.13.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends methods, R (>= 3.1.0), pRoloc(>= 1.27.6), Biobase, MSnbase(>= 2.1.11)
Imports shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard
System Requirements
URL https://github.com/lgatto/pRolocGUI
Bug Reports https://github.com/lgatto/pRolocGUI/issues
See More
Suggests pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown, testthat (>= 3.0.0)
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pRolocGUI_2.13.0.tar.gz
Windows Binary pRolocGUI_2.13.0.zip
macOS Binary (x86_64) pRolocGUI_2.13.0.tgz
macOS Binary (arm64) pRolocGUI_2.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pRolocGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pRolocGUI
Bioc Package Browser https://code.bioconductor.org/browse/pRolocGUI/
Package Short Url https://bioconductor.org/packages/pRolocGUI/
Package Downloads Report Download Stats