plyranges

DOI: 10.18129/B9.bioc.plyranges    

This is the development version of plyranges; for the stable release version, see plyranges.

A fluent interface for manipulating GenomicRanges

Bioconductor version: Development (3.12)

A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.

Author: Stuart Lee [aut, cre] , Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb]

Maintainer: Stuart Lee <lee.s at wehi.edu.au>

Citation (from within R, enter citation("plyranges")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("plyranges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyranges")

 

HTML R Script Introduction
PDF   Reference Manual
Text   NEWS

Details

biocViews Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep
Version 1.9.3
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License Artistic-2.0
Depends R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4)
Imports methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2
SystemRequirements
Enhances
URL
BugReports https://github.com/sa-lee/plyranges
Depends On Me
Imports Me BUSpaRse, fluentGenomics, methylCC, multicrispr
Suggests Me StructuralVariantAnnotation
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plyranges_1.9.3.tar.gz
Windows Binary plyranges_1.9.3.zip
macOS 10.13 (High Sierra) plyranges_1.9.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/plyranges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plyranges
Package Short Url https://bioconductor.org/packages/plyranges/
Package Downloads Report Download Stats

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