tidyFlowCore

This is the development version of tidyFlowCore; to use it, please install the devel version of Bioconductor.

tidyFlowCore: Bringing flowCore to the tidyverse


Bioconductor version: Development (3.20)

tidyFlowCore bridges the gap between flow cytometry analysis using the flowCore Bioconductor package and the tidy data principles advocated by the tidyverse. It provides a suite of dplyr-, ggplot2-, and tidyr-like verbs specifically designed for working with flowFrame and flowSet objects as if they were tibbles; however, your data remain flowCore data structures under this layer of abstraction. tidyFlowCore enables intuitive and streamlined analysis workflows that can leverage both the Bioconductor and tidyverse ecosystems for cytometry data.

Author: Timothy Keyes [cre] , Kara Davis [rth, own], Garry Nolan [rth, own]

Maintainer: Timothy Keyes <tkeyes at stanford.edu>

Citation (from within R, enter citation("tidyFlowCore")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidyFlowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidyFlowCore")
tidyFlowCore HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FlowCytometry, Infrastructure, SingleCell, Software
Version 0.99.2
In Bioconductor since BioC 3.20 (R-4.4)
License MIT + file LICENSE
Depends R (>= 4.3)
Imports Biobase, dplyr, flowCore, ggplot2, methods, purrr, rlang, stats, stringr, tibble, tidyr
System Requirements
URL https://github.com/keyes-timothy/tidyFlowCore https://keyes-timothy.github.io/tidyFlowCore/
Bug Reports https://github.com/keyes-timothy/tidyFlowCore/issues
See More
Suggests BiocStyle, HDCytoData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidyFlowCore_0.99.2.tar.gz
Windows Binary tidyFlowCore_0.99.2.zip
macOS Binary (x86_64) tidyFlowCore_0.99.2.tgz
macOS Binary (arm64) tidyFlowCore_0.99.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidyFlowCore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidyFlowCore
Bioc Package Browser https://code.bioconductor.org/browse/tidyFlowCore/
Package Short Url https://bioconductor.org/packages/tidyFlowCore/
Package Downloads Report Download Stats