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This is the development version of vidger; for the stable release version, see vidger.

Create rapid visualizations of RNAseq data in R

Bioconductor version: Development (3.19)

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Author: Brandon Monier [aut, cre], Adam McDermaid [aut], Jing Zhao [aut], Qin Ma [aut, fnd]

Maintainer: Brandon Monier <brandon.monier at gmail.com>

Citation (from within R, enter citation("vidger")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Visualizing RNA-seq data with ViDGER HTML R Script
Reference Manual PDF


biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-3 | file LICENSE
Depends R (>= 3.5)
Imports Biobase, DESeq2, edgeR, GGally, ggplot2, ggrepel, knitr, RColorBrewer, rmarkdown, scales, stats, SummarizedExperiment, tidyr, utils
System Requirements
URL https://github.com/btmonier/vidger https://bioconductor.org/packages/release/bioc/html/vidger.html
Bug Reports https://github.com/btmonier/vidger/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vidger_1.23.0.tar.gz
Windows Binary vidger_1.23.0.zip
macOS Binary (x86_64) vidger_1.23.0.tgz
macOS Binary (arm64) vidger_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vidger
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vidger
Bioc Package Browser https://code.bioconductor.org/browse/vidger/
Package Short Url https://bioconductor.org/packages/vidger/
Package Downloads Report Download Stats