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This is the development version of yamss; for the stable release version, see yamss.

Tools for high-throughput metabolomics

Bioconductor version: Development (3.19)

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Author: Leslie Myint [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

yamss User's Guide HTML R Script
Reference Manual PDF


biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.29.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment
Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma
System Requirements
URL https://github.com/hansenlab/yamss
Bug Reports https://github.com/hansenlab/yamss/issues
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Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/yamss
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss
Bioc Package Browser https://code.bioconductor.org/browse/yamss/
Package Short Url https://bioconductor.org/packages/yamss/
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