Changes in version 1.5.1 NEW FEATURES - processSim() method generates simulated samples with copy number profiles derived from a specific sample. SIGNIFICANT USER-VISIBLE CHANGES - None BUG FIXES - None Changes in version 0.1.6 NEW FEATURES - calculateLog2ratioMetric() method enables log2 ratio metric calculation using similar workflow than calculateOverlapRegionsMetric() method. SIGNIFICANT USER-VISIBLE CHANGES - plotMetric() replaces plotOverlapMetric() method. The new method can plot all metrics (state call metrics and log2 ratio metrics). - Vignette section 'Workflow for metrics calculated using the level of amplification/deletion' is complete. - New citing section in README and vignette refering to published F1000Research poster (http://www.doi.org/10.7490/f1000research.1118704.1). - Instead of calculating distance, log2 ratio metrics are calculated distance-based metrics (1/(1+distance)). BUG FIXES - None Changes in version 0.1.4 NEW FEATURES - None SIGNIFICANT USER-VISIBLE CHANGES - New website https://krasnitzlab.github.io/CNVMetrics/index.html associated to package. - Vignette section 'Workflow for metrics calculated using CNV status calls' is complete. BUG FIXES - None Changes in version 0.1.3 NEW FEATURES - None SIGNIFICANT USER-VISIBLE CHANGES - plotOneOverlapMetric() method has a new argument silent=TRUE so that the plot is not drawn by default. BUG FIXES - plotOneOverlapMetric() method now uses sample distance for clustering as default clustering method. Changes in version 0.1.2 NEW FEATURES - plotOneOverlapMetric() method enables plotting result of overlapping metric calculation. SIGNIFICANT USER-VISIBLE CHANGES - calculateOverlapRegionsMetric() method changed to calculateOverlapMetric(). BUG FIXES - None Changes in version 0.1.1 NEW FEATURES - Added a NEWS.md file to track changes to the package. - calculateOverlapRegionsMetric() method enables calculation of similarity metrics using overlapping amplified/deleted regions. SIGNIFICANT USER-VISIBLE CHANGES - None. BUG FIXES - None