CHANGES IN VERSION 1.5.4 ------------------------- o Accept DNAString wherever DNAStringSet was accepted. CHANGES IN VERSION 1.5.3 ------------------------- o Fast motif matching Various improvements to improve motif matching speed were implemented. 1. Precomputed position weights to avoid the invokation of the log function during scanning. 2. threshold argument added to avoid having to determine the score distribution for each sequence individually. 3. Stop as soon as the motif score cannot or is certainly exceeding the threshold. CHANGES IN VERSION 1.5.2 ------------------------- o scoreSequence, scoreHistogram, scoreProfile motifHits, motifHitProfile can be used with N-containing sequences. Positions at which the motif overlaps with N's will be NaN. o Background can be computed from a DNAString in addition to a DNAStringSet object. CHANGES IN VERSION 1.5.1 ------------------------- o Background can be computed with sequences that contain N's. CHANGES IN VERSION 1.3.2 ------------------------- o Changed contact information CHANGES IN VERSION 1.1.9 ------------------------- o Removed compiler warnings o Changes to the vignette CHANGES IN VERSION 1.1.8 ------------------------- o Internal refactoring o Changed citation information CHANGES IN VERSION 0.99.0 ------------------------- o Inital Bioconductor Submission