337c9699054fb14552a13a10350190e8 *DESCRIPTION
16415d2d77699467f40aa44db78ee7bb *NAMESPACE
59444fd6392d8274692cc623f1e1fbe6 *R/cemitool.R
ac29807def09b869b3e2472a5fba7036 *R/datasets.R
9db59ec2633e12a1a5dce3d3cefe0dbd *R/diagnostics.R
1f1fbb3ae5e7dc474f8ca073cc134383 *R/enrichment.R
b48c4f4f4c7ee43eac2c3e28e4a10315 *R/filter.R
064e8061fbdf3d1e4cfa962c860dc903 *R/interactions.R
5f83cd5189807288679fe59cc415182b *R/modules.R
25e31af036a6ef07835b6f1d9187b66f *R/report.R
20278ee585b7576605d3e5f9fbc9fa66 *R/utils.R
897ddd94d33b2bf8766d9a42637a5383 *R/visualization.R
66c40b7a6d54336439189b75f2efec1b *README.md
877b1e5ab56a8a578d2f29c88ce59b47 *build/vignette.rds
dc5553205680cc0ac724d8d3fb79d613 *data/cem.rda
89f03a2a0ca5ff13c5474c7f0c64cc6a *data/expr0.rda
4c28b940990865a745a2bef628bf17e8 *data/sample_annot.rda
e682b76148c561dcb01d6a1a69538ddf *exec/CEMiTool.R
35319a6ab588558f116d9ab472b24ab8 *inst/CITATION
bdc9a4465017ebc9abf0eaeb6640babc *inst/diagnostics/diagnostics.Rmd
61283f434e8a6bea157b9357f850e05f *inst/doc/CEMiTool.R
b4ed75eb80a50c53760a3c976f074d2e *inst/doc/CEMiTool.Rmd
ba398a681d48f437c3b64107f1584725 *inst/doc/CEMiTool.html
2dd3756bada27fda12fca7dd9b683477 *inst/extdata/interactions.tsv
eb0e68a6280ed619e06be914b1e4df72 *inst/extdata/pathways.gmt
282704dd4d21be4a96c399bf5b3d7d65 *inst/report/report.Rmd
65c58e2d9d0c1599c9edbfa5bd179a87 *man/CEMiTool-class.Rd
0de342e7d6cc8cc9434dba49d07955d3 *man/adj_data.Rd
4d2dd531973dff9df55483a3fcbccf58 *man/cem.Rd
ef03fa5b9f0914a68702b9066c8a22a0 *man/cemitool.Rd
82ea8571825ea8083ee9c12dc4de4d25 *man/diagnostic_report.Rd
12b261509cd3d8982019a4e0639d1ab2 *man/expr0.Rd
7b0b91e911140566744800a789f3be09 *man/expr_data.Rd
bcee7139f0c3a6c38d91fe6d9e4a0173 *man/expr_pct_filter.Rd
36b2af542285e90165f21a39973ab510 *man/filter_expr.Rd
c235d78c78a3ad749218378f49c270ed *man/find_modules.Rd
45318ac22ebaff34a5aac16ef4996ddf *man/fit_data.Rd
1511fc99795a6c1a02dcb40831cf3c6b *man/generate_report.Rd
b5988b9f0cd7f96555753a77777aec22 *man/get_adj.Rd
fa290ed43971ee517c9cc99842c1eb34 *man/get_beta_data.Rd
d26724fb1396cf75f039a0283d445269 *man/get_cemitool_r2_beta.Rd
f921072e791dbbf30df22688cc6cc7bb *man/get_connectivity.Rd
f3f28cea76c67eb5d570b27deb1f881e *man/get_hubs.Rd
9304ba449030cfff130c7d034789a9a9 *man/get_merged_mods.Rd
f6438761f6ea690771925cf3a9f867ec *man/get_mods.Rd
dd2ea6d3c35bc4b8f3c2f90c6d509caa *man/get_phi.Rd
362d3f7300ada7f702b993d961a3e4ee *man/gsea_data.Rd
0546d621d1bc86bc5f8eb9351ef8b04a *man/interactions_data.Rd
9f69adf6198d60360a6acc2805f1f2da *man/mod_colors.Rd
dd75a50c756eb98ceb74147320fb1b70 *man/mod_gene_num.Rd
0322649657e6df76518a9aa1df2d2207 *man/mod_gsea.Rd
1fb9c1be232f1c598633ad0693536fdb *man/mod_names.Rd
2f4ceee090670563f6557d205d3e11c0 *man/mod_ora.Rd
8b6a1d23fd552051aad3f2417ecf9a30 *man/mod_summary.Rd
603e45305e889d820a509911b78c1bee *man/module_genes.Rd
35e52661dfc7ffe0b08bc7b19fb07b61 *man/module_to_gmt.Rd
4300d67347367c973a5c055327a100d2 *man/new_cem.Rd
570bef1066cc9af2322e3481e275963e *man/nmodules.Rd
da79e0cafe46b29bedb800e869b08937 *man/ora_data.Rd
f912e22e6509d3d1606032b14a9e317a *man/plot_beta_r2.Rd
8f5f5da30c2eccfcbb739523a5a25516 *man/plot_gsea.Rd
4332475a6163a97f0b5147966ff21dd9 *man/plot_hist.Rd
9e6ec7dadb29583cf9c75f28053e2fa7 *man/plot_interactions.Rd
7bcf4c2f8030692353221fa18d254817 *man/plot_mean_k.Rd
1a722a0182d5c19798ffd0f6366e1a31 *man/plot_mean_var.Rd
e8f9bbfb9591a8f569192702c66ce992 *man/plot_ora.Rd
70c8f0b269bd2ba3063930e337332063 *man/plot_ora_single.Rd
1c2c11e9ef6fe55a6fa888f93ec9f9a7 *man/plot_profile.Rd
3a6bb99647d05751567536b7671a7c0e *man/plot_qq.Rd
eada771c7e156c0b9508b503a7e38fb4 *man/plot_sample_tree.Rd
16d2c770e6f2fb97662bf415b1577632 *man/read_gmt.Rd
89f4a880c869382d3ba40489c127a809 *man/sample_annot.Rd
3af13a3290834666178dd5bd4432b930 *man/sample_annotation.Rd
a55881ef7cbad8cddb770556a9b036bb *man/save_plots.Rd
bb50d37851504ca8aede425aed76757a *man/select_genes.Rd
64787c41263d0a116317642d7bdcafac *man/show-CEMiTool-method.Rd
fa09ee285e5b3191f41c956614d00f01 *man/show_plot.Rd
94615729737404245e33adcea13b3a56 *man/vst.Rd
2d61ba5dda00ee990afae9f3f4470e64 *man/write_files.Rd
dba1fafeeedff412b51edbfaf52b2100 *tests/testthat.R
eecddb4778f86b0aef2e9a462d166b4f *tests/testthat/test-adj_data.R
edf77f13151d83ea8758a4beab81fde1 *tests/testthat/test-cemitool.R
97b8bc0d2c116f0cbafd578db3b132ff *tests/testthat/test-diagnostic_plots.R
4f499c8f6470ed9f1a939b1727e3bce3 *tests/testthat/test-expr_data.R
d1292f8741644a110813b2f570c95d78 *tests/testthat/test-filter_select.R
5c722c93169a1d60aabf0758ebfdee7d *tests/testthat/test-find_modules.R
91a0feb2be2c719747b9337079cd929a *tests/testthat/test-generate_report.R
7e47620ec5e592d63e4deea540798fcb *tests/testthat/test-get_adj.R
c71296af7895721e66788eb5cfc6ea03 *tests/testthat/test-get_hubs.R
eba623479cf274175ad12dbd5c1a7640 *tests/testthat/test-interactions_data.R
67a789ea905c4ccf7b858bfffd97c8af *tests/testthat/test-mod_colors.R
c92c6ed492b6bda2f4e2112d2cb3458e *tests/testthat/test-mod_gene_num.R
e9bea0f51873bd3f842a0ad790461830 *tests/testthat/test-mod_gsea.R
164b6d0cca712d1d6dd002452f364d2d *tests/testthat/test-mod_names.R
3fa464104dec5e0b4009980212462ecb *tests/testthat/test-mod_ora.R
4d49ffe35fa24754373a7c520090caf8 *tests/testthat/test-mod_summary.R
50df57404549f9ad4df04207a0506426 *tests/testthat/test-new_cem.R
1913c4b2b5f0bfe5a44a6c08cad017d8 *tests/testthat/test-nmodules.R
504f5418d46c829ea1f1d143159f322a *tests/testthat/test-plot_beta_r2.R
f2060f7d78c05c8ba33dce79a2e658e5 *tests/testthat/test-plot_gsea.R
06798bfca5fddf51cdb9056917af9a7b *tests/testthat/test-plot_interactions.R
e1bb4a08f7c31a1249a42218203f5eda *tests/testthat/test-plot_mean_k.R
71c2a1567834d763703d2a5e3bb8933f *tests/testthat/test-plot_ora.R
07e2719822c21738d27c5aa1902df628 *tests/testthat/test-plot_profile.R
dbaadc3ba2df4a3c45930f129fa7713e *tests/testthat/test-sample_annotation.R
b4ed75eb80a50c53760a3c976f074d2e *vignettes/CEMiTool.Rmd
