3a47838d4bcbe4a95f30fc74158eb292 *DESCRIPTION
b2d693a51a9dc02f7e1a89425c165d32 *LICENCE
f88323191de65bb1282e1b8b4304fdae *NAMESPACE
fbef728cd1b06ff637bcaa6dd1d8c649 *NEWS
9e08e55becb5ebab264edeb6129803ba *R/RcppExports.R
fcca306fe2d6f950a0f63113b3c1be8e *R/fgsea-package.R
f609b043ead88edebf344a686d95954b *R/fgsea.R
2c8f94f455138c1b797906c2872e65d6 *R/fgseaMultilevel.R
df6fdde4f7d91b94137542982d7e4c5b *R/fgseaORA.R
3f3233b2a25d0102c8b4e409d4b6f33a *R/geseca-multilevel.R
8b09144cd179679e87456a1f5a431a7a *R/geseca-plot.R
65d1306013c00e3be6daeec5acc559e4 *R/geseca-simple.R
1733f65a986fdb6573ff670716853c84 *R/geseca-utils.R
bcb4a0815a60e08b1ca86eb4a0547da5 *R/pathways.R
d008a49219df36f8e0df85dd68fc61bc *R/plot.R
654bf76e19be7d69c5060a75c8d5bd02 *R/util.R
1c9f5f4d7a820ee37f82f23d6e99e700 *README.md
8cdf2f872fd03b3151b3a6f88ba824de *build/vignette.rds
8d00bb835829324fe1381b5c9f1ce648 *data/exampleExpressionMatrix.rda
b860eb0f39270892ec132917bb8f6787 *data/examplePathways.rda
e4fcc20c4ce923fe495bb662717efbdf *data/exampleRanks.rda
da4ade9d825632e19c5a5ab27170268f *inst/CITATION
0a9b7d5d2473db06698290bd0ee105c5 *inst/doc/fgsea-tutorial.R
7ca592e3757ceb1d402cdfdb134701cd *inst/doc/fgsea-tutorial.Rmd
644899cb0cbd7ed4b71dc3ebaa143f0e *inst/doc/fgsea-tutorial.html
31acb90a70db63b1a4a08bf07fcd673d *inst/doc/geseca-tutorial.R
f032bda670b71105da9e35cae1412f26 *inst/doc/geseca-tutorial.Rmd
eb6be8ed91272a5d0e1fc2adc1846c79 *inst/doc/geseca-tutorial.html
77d18e2c0fa310267e811dfd54137221 *inst/exact/exact.cpp
e08265ca7a7667bf617b12efe9d55c1b *inst/exact/exact_readme.md
bf48816f9b6661290a15fb3e25598d2c *inst/exact/runFgsea.R
39f9e86e184bd67de2e6c6223c359b2b *inst/extdata/GDS289.tsv
4ee31aa0279ff1fd4b7470ba2d88df3c *inst/extdata/fgsea_res.tsv
28ee4d03b16feb61d76590e5a5215f0a *inst/extdata/gse14308_expression_matrix.tsv
9bcfe94d838d25f5e78cf17715e430d5 *inst/extdata/mouse.reactome.gmt
f19234833ce08fe11275405e50b3f108 *inst/extdata/naive.vs.th1.rnk
b393aa6f6f3897d3fc4746eb843be89c *inst/extdata/pathway.txt
dc56d443863e5b0b44ba82c78d06f5dd *inst/gen_gene_ranks.R
9135c59205626c2fcb68d95b34b2777e *inst/gen_gse14308_expression_matrix.R
e83e36867e5967b55748dfa327c3de98 *inst/gene_reactome_pathways.R
9aaa332e9fea23b450ea55b959c58bad *inst/gse19429_gsea.R
8dfcd7fa1d0438c7bf4e70de75a466a0 *inst/run_broad_gsea.R
569648ef2f14826455c28ab8d8d69c01 *inst/th1_gsea.R
a660b321ec3e27c4d6e85f9a4bb5ebc7 *man/calcGseaStat.Rd
a4ee44094ded118c05a2c39dbdf159a4 *man/calcGseaStatBatchCpp.Rd
0e9072c9f23804dd057c3a33d9433ef3 *man/collapsePathways.Rd
72b746145bd9d00c275b267456f9f1c5 *man/collapsePathwaysGeseca.Rd
97526b557c17c0b786cd75bd531f1cba *man/collapsePathwaysORA.Rd
405bceb809b43a4e66638a0fbe806ff7 *man/exampleExpressionMatrix.Rd
4e0db5dfa0508ed32a9097bf8df14ad8 *man/examplePathways.Rd
bccc507ed6eee6293c32d80fadd03f60 *man/exampleRanks.Rd
1841ae54afd1f74ff3e277c8d2aba7d0 *man/fgsea.Rd
2ee4070a4718fd6fcbb397016e3d6539 *man/fgseaLabel.Rd
15d03a3714121b04607a940e82d02ddd *man/fgseaMultilevel.Rd
3f5fc5a5384ab502b2f0ff59299100cf *man/fgseaSimple.Rd
45c797e45b33570325cb35860989476e *man/fgseaSimpleImpl.Rd
00e6cdcb041a98a01b0d002342f22e4d *man/fora.Rd
6e2ddeb54dbeb0f2bd829debcdca0646 *man/geseca.Rd
10d67b9291136fd6eb82c6cfa4cd4f36 *man/gesecaSimple.Rd
8244458b986f0df2acdbee2f3350f3e1 *man/gmtPathways.Rd
6ceb5385fabb3f75092dd20605ef1209 *man/mapIdsList.Rd
7556b83fad6dd72659698d71e129b023 *man/multilevelError.Rd
f125aa20f6c66e898067f31a2710127f *man/multilevelImpl.Rd
1be644a2228628b7efb191f818e66a07 *man/plotCoregulationProfile.Rd
adad2b00908904972eab91d56fd2daf5 *man/plotCoregulationProfileImage.Rd
9eca206a8eab81af79ca03888acf9004 *man/plotCoregulationProfileReduction.Rd
833d0879ca67b8a6a30be73d3fa9508b *man/plotCoregulationProfileSpatial.Rd
696731352f892211a7e73afd41876425 *man/plotEnrichment.Rd
d94a3238fceb192369d94de222d5f9f7 *man/plotEnrichmentData.Rd
b79570bc2d7871db2d7c3a063cf3f06e *man/plotGesecaTable.Rd
b43cc9332224123784614cb7da946cb7 *man/plotGseaTable.Rd
f76bc5ff14bbde1f98773221d2bacca8 *man/reactomePathways.Rd
0d2d40d03fb90c3d01dcd0906afeeab6 *man/writeGmtPathways.Rd
71afc4a0847b79971a58c21c210b86d3 *src/RcppExports.cpp
38cb59f981f79916f0fa0c331119426f *src/ScoreCalculation.cpp
f40b2d27c11208ce61d3f7e3c4e06017 *src/ScoreCalculation.h
3c1bf0d3ee5e0f2d5cd27d147c3a5d6f *src/ScoreRuler.cpp
710b9021198b16f2b177af51894c0344 *src/ScoreRuler.h
5269032620bab0b25130cff24d2a6a9d *src/esCalculation.cpp
f94b9538f4866e2d094210ec772b92a3 *src/esCalculation.h
c227d9217898b453e9583f3272afdf9e *src/fastGSEA.cpp
a92a743139f850f5cd62401db5d471b5 *src/fastGSEA.h
f069c267ef5ac4f8656e5040488644d3 *src/fgseaMultilevel.cpp
8d5128c644ade76acecca6e4fa5c52a6 *src/fgseaMultilevel.h
7b0901b9b7131ca5656d37747dd39c6b *src/fgseaMultilevelSupplement.cpp
3443c583a8672d560d63fde30909c222 *src/fgseaMultilevelSupplement.h
ea9c872e9d96d0df9a54059a668af189 *src/geseca.cpp
6a0ca96e952b6094b5e9661780f479cc *src/geseca.h
236bdd5c5e121f26dd0d0890695bb39a *src/util.cpp
7a232042fd65219eafdfabfba15bfd3e *src/util.h
24e63c516d7ee9039adbc5f7bd4e7a30 *tests/testthat.R
93be21a16c44c3bfcb02dfe25b037007 *tests/testthat/test_fora.R
a7ac9a845fee88f412db6b64bab46a97 *tests/testthat/test_geseca.R
9a94a073238c7bbb0f7e7a2314a11546 *tests/testthat/test_gsea_analysis.R
1b05b0b4eccbaf6ae4b460f1b4798edb *tests/testthat/test_gsea_multilevel.R
570f74575cb736b5da9b2e68c44a51f9 *tests/testthat/test_gsea_stat.R
bad7287b5791b18ccd0c11403f89e4cd *tests/testthat/test_pathways.R
a6967cc0abadcc443fb10a0361fad514 *tests/testthat/test_plot.R
7ca592e3757ceb1d402cdfdb134701cd *vignettes/fgsea-tutorial.Rmd
b0775df5d1640e354e554ba7c0ccfac8 *vignettes/geseca-spatial-top.png
f032bda670b71105da9e35cae1412f26 *vignettes/geseca-tutorial.Rmd
d62f003b2ac46be730159e6516e24255 *vignettes/geseca-tutorial.md
45e5968466cac4bb3ae71a454748dde3 *vignettes/geseca-vignette-score-toy-example.png
