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BioMartGOGeneSets

This is the development version of BioMartGOGeneSets; for the stable release version, see BioMartGOGeneSets.

Gene Ontology Gene Sets from BioMart


Bioconductor version: Development (3.19)

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioMartGOGeneSets")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")
BioMart Gene Ontology Gene Sets Collections HTML R Script
Pre-compiled GO Gene Sets HTML R Script
Retrieve GO Gene Sets from BioMart HTML R Script
Versions HTML
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AnnotationData, Organism
Version 0.99.11
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports utils, S4Vectors, GenomicRanges
System Requirements
URL https://github.com/jokergoo/BioMartGOGeneSets
See More
Suggests biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioMartGOGeneSets_0.99.11.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BioMartGOGeneSets/
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